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CodonCode corporation phred/phrap software
Phred/Phrap Software, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/phred+software/phred+phrap+software/pm28392541-47-31-33
Average 90 stars, based on 1 article reviews
phred/phrap software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

other:

Article Title: Human Gut Bacterial Communities Are Altered by Addition of Cruciferous Vegetables to a Controlled Fruit- and Vegetable-Free Diet
Article Snippet: 16S rRNA gene sequences were edited and assembled into consensus sequences using PHRED and PHRAP software packages (CodonCode) based on PHRAP quality scores of 20.

Article Title: In Planta Expression Screens of Phytophthora infestans RXLR Effectors Reveal Diverse Phenotypes, Including Activation of the Solanum bulbocastanum Disease Resistance Protein Rpi-blb2
Article Snippet: Therefore, we cloned the amplicons and generated high-quality sequences (phred Q>20, phred software; CodonCode) of the inserts of 85 different clones.

Plasmid Preparation:

Article Title: Preparing and Analyzing Expressed Sequence Tags (ESTs) Library for the Mammary Tissue of Local Turkish Kivircik Sheep
Article Snippet: Automated sequencing was performed on an automated high-throughput pipeline using the ABI 3730 capillary sequencer (PE Applied Biosystems, Foster City, CA) at the Genome Sequencing Center, Washington University in St. Louis (WUSTL). .. For analysis of the raw EST data, the low-quality, adapter, and the vector sequences were removed with Phred software [ , ] (CodonCode Corp., Dedham, MA). ..

Article Title: Generation and Analysis of Expressed Sequence Tags from Olea europaea L.
Article Snippet: Automated sequencing was performed on an automated high-throughput pipeline using the ABI 3730 capillary sequencer (PE Applied Biosystems, Foster City, CA) at the Genome Sequencing Center, Washington University in St. Louis (WUSTL). .. EST sequences were trimmed of vector, adapter, and low-quality sequence by using Phred software [ , ] (CodonCode Crop., Dedham, MA.) ..

Software:

Article Title: Preparing and Analyzing Expressed Sequence Tags (ESTs) Library for the Mammary Tissue of Local Turkish Kivircik Sheep
Article Snippet: Automated sequencing was performed on an automated high-throughput pipeline using the ABI 3730 capillary sequencer (PE Applied Biosystems, Foster City, CA) at the Genome Sequencing Center, Washington University in St. Louis (WUSTL). .. For analysis of the raw EST data, the low-quality, adapter, and the vector sequences were removed with Phred software [ , ] (CodonCode Corp., Dedham, MA). ..

Article Title: Generation and Analysis of Expressed Sequence Tags from Olea europaea L.
Article Snippet: Automated sequencing was performed on an automated high-throughput pipeline using the ABI 3730 capillary sequencer (PE Applied Biosystems, Foster City, CA) at the Genome Sequencing Center, Washington University in St. Louis (WUSTL). .. EST sequences were trimmed of vector, adapter, and low-quality sequence by using Phred software [ , ] (CodonCode Crop., Dedham, MA.) ..

Article Title: Software scripts for quality checking of high-throughput nucleic acid sequencers.
Article Snippet: .. The phred software is typically executed under UNIX; however, there are modified phred versions (CodonCode, Dedham, MA, 1302 BioTechniques Vol. ..

Article Title: Transcriptional Responses of <i>Paxillus involutus</i> and <i>Betula pendula</i> During Formation of Ectomycorrhizal Root Tissue
Article Snippet: available on-line contains five supplemental tables not included in the print edition. e-Xtra*

Sequencing:

Article Title: Generation and Analysis of Expressed Sequence Tags from Olea europaea L.
Article Snippet: Automated sequencing was performed on an automated high-throughput pipeline using the ABI 3730 capillary sequencer (PE Applied Biosystems, Foster City, CA) at the Genome Sequencing Center, Washington University in St. Louis (WUSTL). .. EST sequences were trimmed of vector, adapter, and low-quality sequence by using Phred software [ , ] (CodonCode Crop., Dedham, MA.) ..

Modification:

Article Title: Software scripts for quality checking of high-throughput nucleic acid sequencers.
Article Snippet: .. The phred software is typically executed under UNIX; however, there are modified phred versions (CodonCode, Dedham, MA, 1302 BioTechniques Vol. ..

DNA Sequencing:

Article Title: Transcriptional Responses of <i>Paxillus involutus</i> and <i>Betula pendula</i> During Formation of Ectomycorrhizal Root Tissue
Article Snippet: available on-line contains five supplemental tables not included in the print edition. e-Xtra*

Gene Expression:

Article Title: Transcriptional Responses of <i>Paxillus involutus</i> and <i>Betula pendula</i> During Formation of Ectomycorrhizal Root Tissue
Article Snippet: available on-line contains five supplemental tables not included in the print edition. e-Xtra*



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